Precluding Oscillations in Michaelis-Menten Approximations of Dual-site Phosphorylation Systems
نویسنده
چکیده
Oscillations play a major role in a number of biological systems, from predator-prey models of ecology to circadian clocks. In this paper we focus on the question of whether oscillations exist within dual-site phosphorylation systems. Previously, Wang and Sontag showed, using monotone systems theory, that the Michaelis-Menten (MM) approximation of the distributive and sequential dual-site phosphorylation system lacks oscillations. However, biological systems are generally not purely distributive; there is generally some processive behavior as well. Accordingly, this paper focuses on the MM approximation of a general sequential dual-site phosphorylation system that contains both processive and distributive components, termed the composite system. Expanding on the methods of Bozeman and Morales, we find a necessary condition for the existence of oscillations in the MM approximation of the composite system. This condition precludes oscillations in the MM approximations of the processive and distributive systems, shown previously, as well as in the MM approximation of the partially processive and partially distributive mixed-mechanism system.
منابع مشابه
Kinetic analysis of multisite phosphorylation using analytic solutions to Michaelis-Menten equations.
Phosphorylation-induced expression or modulation of a functional protein is a common signal in living cells. Many functional proteins are phosphorylated at multiple sites and it is frequently observed that phosphorylation at one site enhances or suppresses phosphorylation at another site. Therefore, characterizing such cooperative phosphorylation is important. In this study, we determine a temp...
متن کاملAccuracy of the Michaelis-Menten approximation when analysing e↵ects of molecular noise
Quantitative biology relies on the construction of accurate mathematical models, yet the e↵ectiveness of these models is often predicated on making simplifying approximations that allow for direct comparisons with available experimental data. The Michaelis-Menten approximation is widely used in both deterministic and discrete stochastic models of intracellular reaction networks, due to the ubiq...
متن کاملGlobal stability of enzymatic chains of full reversible Michaelis-Menten reactions.
We consider a chain of metabolic reactions catalyzed by enzymes, of reversible Michaelis-Menten type with full dynamics, i.e. not reduced with any quasi-steady state approximations. We study the corresponding dynamical system and show its global stability if the equilibrium exists. If the system is open, the equilibrium may not exist. The main tool is monotone systems theory. Finally we study t...
متن کاملComparing Logistic and Michaelis-Menten Multiphasic Models for Analysis of in vitro Gas Production Profiles of some Starchy Feedstuffs
Two multi-phasic models (logistic (LOG) and Michaelis-Menten (MM)) with three sub-curves were used to describe gas production kinetics of corn (CG), barley (BG), wheat (WG) and triticale (TG) grains. In each model sub curve, 1 describes the gas production caused by fermentation of the soluble fraction, gas production caused by fermentation of the non-soluble fraction is described in sub curve 2...
متن کاملLegitimacy of the stochastic Michaelis-Menten approximation.
Michaelis-Menten kinetics are commonly used to represent enzyme-catalysed reactions in biochemical models. The Michaelis-Menten approximation has been thoroughly studied in the context of traditional differential equation models. The presence of small concentrations in biochemical systems, however, encourages the conversion to a discrete stochastic representation. It is shown that the Michaelis...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2017